PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009283
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 233aa    MW: 26063.5 Da    PI: 9.4203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009283genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.6e-2170119356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++a+k+++ge
  Cla009283  70 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEAAKRIRGE 119
                9*******.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.89469126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3269126IPR001471AP2/ERF domain
SMARTSM003801.6E-3969132IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2269126IPR016177DNA-binding domain
CDDcd000182.91E-3270125No hitNo description
PfamPF008473.1E-1570119IPR001471AP2/ERF domain
PRINTSPR003675.1E-127081IPR001471AP2/ERF domain
PRINTSPR003675.1E-1292108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCGGAIISDF IERKRTRKLS NESLWSHIDP FSDLLGLNYS PVKSEKPKKR DRATAAVAVE  60
KTPKARKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD EAAKRIRGEK  120
AKLNFAPAPP SSPPLPAAQP HSPAKKRCVL PELTRGGSNA TGPPPCRRVD NSCDSDEFYY  180
GEELASLRSF LGLDSEEQQA SQFGGNGEFE RVDVDLWMMD DMSLNEQKLS QLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2165125162ATERF1
3gcc_A1e-2165125162ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118ERKRTRKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004153075.21e-140PREDICTED: ethylene-responsive transcription factor RAP2-3-like
SwissprotP427363e-51RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0A0KD181e-140A0A0A0KD18_CUCSA; Uncharacterized protein
STRINGVIT_05s0077g01860.t012e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-42ethylene-responsive element binding protein